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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr2|226864603|226867318|+|2|circRNA|RHBDD1|ENST00000341329.7|2,3 | Not cell-type specific | CRAMS183 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CircTest | Not cell-type specific |
chr2|226906792|226914351|+|3|circRNA|RHBDD1|ENST00000341329.7|4,5,6 | Not cell-type specific | CRAMS229 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | Not supported | Not cell-type specific |
chr2|233388256|233390483|+|2|circRNA|DGKD|NM_152879|2,3 | Not cell-type specific | CRAMS57 | Downregulated in PvN | HCT116,HT29,LoVo,SW480,SW620 | Not supported | Not cell-type specific |
chr2|23958300|23984831|+|6|circRNA|UBXN2A|ENST00000446425.2|2,3,4,5,6,7 | Not cell-type specific | CRAMS240 | Downregulated in MvN | HCT116,HT29,SW480,SW620 | CIRIquant & CircTest | Not cell-type specific |
chr2|26364301|26375148|+|5|circRNA|EPT1|ENST00000613142.4|2,3,4,5,6 | Not cell-type specific | CRAMS277 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | Not supported | Not cell-type specific |
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