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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr2|190659157|190673152|+|3|circRNA|NAB1|ENST00000409581.5|2,3,4 | Not cell-type specific | CRAMS89 | Downregulated in PvN | HCT116,HT29,LoVo,SW480,SW620 | CircTest | Not cell-type specific |
chr2|199308759|199328910|-|3|circRNA|SATB2|ENST00000417098.5|10,9,8 | Not cell-type specific | CRAMS97 | Downregulated in PvN,Downregulated in MvN | LoVo,SW480,SW620 | CIRIquant | Not cell-type specific |
chr2|199308759|199381820|-|7|circRNA|SATB2|ENST00000417098.5|10,9,8,7,6,5,4 | Not cell-type specific | CRAMS145 | Downregulated in MvN | LoVo,SW480 | CIRIquant | Not cell-type specific |
chr2|199348700|199433514|-|5|circRNA|SATB2|ENST00000417098.5|7,6,5,4,3 | Not cell-type specific | CRAMS180 | Downregulated in MvN | HCT116,LoVo,SW480 | Not supported | Not cell-type specific |
chr2|199368604|199381820|-|3|circRNA|SATB2|ENST00000417098.5|6,5,4 | Not cell-type specific | CRAMS81 | Downregulated in PvN,Downregulated in MvN | HCT116,LoVo | CIRIquant | Not cell-type specific |
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