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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr3|4410864|4420146|-|4|circRNA|SUMF1|ENST00000448413.5|7,6,5,4 | Not cell-type specific | CRAMS158 | Downregulated in MvN | HCT116,LoVo,SW480 | CIRIquant & CircTest | Not cell-type specific |
chr3|47037665|47046621|-|3|circRNA|SETD2|NM_014159|18,17,16 | Not cell-type specific | CRAMS78 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant & CircTest | Not cell-type specific |
chr3|47097954|47106120|-|4|circRNA|SETD2|NM_014159|9,8,7,6 | Not cell-type specific | CRAMS93 | Downregulated in PvN,Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant & CircTest | Not cell-type specific |
chr3|47425484|47428670|-|5|circRNA|SCAP|ENST00000428413.5|8,7,6,5,4 | Not cell-type specific | CRAMS45 | Downregulated in MvP | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant | Not cell-type specific |
chr3|50105076|50105709|+|2|circRNA|RBM5|NM_005778|9,10 | Not cell-type specific | CRAMS106 | Downregulated in PvN,Downregulated in MvN | HCT116,LoVo,SW480 | CIRIquant | Not cell-type specific |
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