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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr3|170145422|170149244|-|2|circRNA|PHC3|NM_001308116|6,5 | Not cell-type specific | CRAMS282 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant | Not cell-type specific |
chr3|172645622|172648114|-|2|circRNA|NCEH1|ENST00000475381.5|3,2 | Not cell-type specific | CRAMS335 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | Not supported | Not cell-type specific |
chr3|179203543|179204588|+|2|circRNA|PIK3CA|NM_006218|5,6 | Not cell-type specific | CRAMS139 | Downregulated in MvN | HT29,LoVo,SW480,SW620 | CIRIquant & CircTest | Not cell-type specific |
chr3|183643479|183651276|+|2|circRNA|KLHL24|ENST00000242810.10|2,3 | Not cell-type specific | CRAMS182 | Downregulated in MvN | HT29,LoVo,SW480,SW620 | Not supported | Not cell-type specific |
chr3|183643479|183672484|+|6|circRNA|KLHL24|ENST00000242810.10|2,3,4,5,6,7 | Not cell-type specific | CRAMS87 | Downregulated in PvN,Downregulated in MvN | HT29,LoVo,SW480,SW620 | CIRIquant & CircTest | Not cell-type specific |
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