top of page
CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr4|87046165|87047594|+|2|circRNA|AFF1|ENST00000395146.8|3,4 | Not cell-type specific | CRAMS82 | Downregulated in PvN,Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CircTest | Not cell-type specific |
chr4|90308243|90313047|+|2|circRNA|CCSER1|NM_001145065|2,3 | Not cell-type specific | CRAMS264 | Downregulated in MvN | HCT116,HT29,LoVo,SW480 | CircTest | Not cell-type specific |
chr4|911672|913668|-|3|circRNA|GAK|NM_005255|4,3,2 | Not cell-type specific | CRAMS132 | Downregulated in MvN | HCT116,SW620 | CIRIquant & CircTest | Not cell-type specific |
chr4|94573350|94586444|+|6|circRNA|PDLIM5|ENST00000318007.9|4,5,6,7,8,9 | Not cell-type specific | CRAMS200 | Downregulated in MvN | HCT116,HT29,LoVo,SW480 | CIRIquant & CircTest | Not cell-type specific |
chr5|108768092|108798389|+|2|circRNA|FER|NM_005246|2,3 | Not cell-type specific | CRAMS360 | Downregulated in MvN | Not expressed in cell lines | Not supported | Not cell-type specific |
Page 1 of 1
bottom of page