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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr4|37631384|37638504|-|3|circRNA|RELL1|ENST00000314117.8|6,5,4 | Not cell-type specific | CRAMS216 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant | Not cell-type specific |
chr4|38089931|38103157|+|3|circRNA|TBC1D1|NM_001253912|15,16,17 | Not cell-type specific | CRAMS228 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | Not supported | Not cell-type specific |
chr4|39075964|39086727|+|4|circRNA|KLHL5|NM_001007075|3,4,5,6 | Not cell-type specific | CRAMS211 | Downregulated in MvN | HCT116,SW480,SW620 | CIRIquant | Not cell-type specific |
chr4|39326562|39327756|-|2|circRNA|RFC1|NM_001204747|6,5 | Not cell-type specific | CRAMS278 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CircTest | Not cell-type specific |
chr4|39737419|39777810|+|3|circRNA|UBE2K|NM_001312646|2,3,4 | Not cell-type specific | CRAMS286 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant & CircTest | Not cell-type specific |
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