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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr4|109462900|109463644|+|1|circRNA|SEC24B|ENST00000504968.6|3 | Not cell-type specific | CRAMS256 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CircTest | Not cell-type specific |
chr4|128992166|129003876|-|4|circRNA|SCLT1|ENST00000281142.9|9,8,7,6 | Not cell-type specific | CRAMS51 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CircTest | Not cell-type specific |
chr4|139125163|139139497|-|3|circRNA|ELF2|ENST00000394235.6|4,3,2 | Not cell-type specific | CRAMS70 | Downregulated in PvN,Downregulated in MvN | HCT116,HT29,LoVo,SW480 | CIRIquant & CircTest | Not cell-type specific |
chr4|139137629|139139497|-|2|circRNA|ELF2|ENST00000394235.6|3,2 | Not cell-type specific | CRAMS343 | Downregulated in MvN | HT29,SW480 | CIRIquant | Not cell-type specific |
chr4|139695196|139704196|+|3|circRNA|MGST2|ENST00000616265.4|3,4,5 | Not cell-type specific | CRAMS285 | Downregulated in MvN | HT29 | CIRIquant | Not cell-type specific |
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