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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr6|72295936|72333835|+|4|circRNA|RIMS1|ENST00000522211.5|7,8,9,10 | Not cell-type specific | CRAMS62 | Downregulated in PvN,Downregulated in MvN | Not expressed in cell lines | CIRIquant & CircTest | Not cell-type specific |
chr6|73480674|73482244|+|3|circRNA|MTO1|ENST00000415954.6|7,8,9 | Not cell-type specific | CRAMS319 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CircTest | Not cell-type specific |
chr6|75621531|75634811|+|4|circRNA|SENP6|NM_001304792|2,3,4,5 | Not cell-type specific | CRAMS281 | Downregulated in MvN | HCT116,LoVo,SW480,SW620 | CircTest | Not cell-type specific |
chr6|85618817|85619417|-|2|circRNA|SYNCRIP|NM_001159676|9,8 | Not cell-type specific | CRAMS284 | Downregulated in MvN | HCT116,HT29,LoVo,SW480 | CIRIquant & CircTest | Not cell-type specific |
chr6|89862125|89871388|+|3|circRNA|CASP8AP2|ENST00000237177.10|7,8,9 | Not cell-type specific | CRAMS224 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant | Not cell-type specific |
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