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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr6|144537581|144539443|+|2|circRNA|UTRN|NM_007124|43,44 | Not cell-type specific | CRAMS19 | Downregulated in PvN | Not expressed in cell lines | CIRIquant & CircTest | Not cell-type specific |
chr6|149378017|149379518|+|1|circRNA|TAB2|NM_001292035|3 | Not cell-type specific | CRAMS188 | Downregulated in MvN | HCT116,HT29,SW480,SW620 | Not supported | Not cell-type specific |
chr6|151348710|151353752|+|1|circRNA|AKAP12|ENST00000402676.6|4 | Not cell-type specific | CRAMS41 | Downregulated in PvN,Downregulated in MvN | HCT116 | CIRIquant & CircTest | Not cell-type specific |
chr6|154441291|154442290|-|2|circRNA|CNKSR3|ENST00000616478.4|4,3 | Not cell-type specific | CRAMS322 | Downregulated in MvN | HCT116 | Not supported | Not cell-type specific |
chr6|163455278|163478896|+|2|circRNA|QKI|ENST00000361758.8|2,3 | Not cell-type specific | CRAMS226 | Downregulated in MvN | HCT116 | CIRIquant & CircTest | Not cell-type specific |
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