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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr5|65567512|65572286|+|4|circRNA|PPWD1|NM_015342|2,3,4,5 | Not cell-type specific | CRAMS130 | Downregulated in MvN | HCT116,LoVo,SW480,SW620 | Not supported | Not cell-type specific |
chr5|71502598|71512428|+|4|circRNA|BDP1|ENST00000358731.8|15,16,17,18 | Not cell-type specific | CRAMS238 | Upregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CircTest | Not cell-type specific |
chr5|72861807|72865729|+|2|circRNA|TNPO1|ENST00000337273.9|5,6 | Not cell-type specific | CRAMS334 | Downregulated in MvN | HCT116,LoVo,SW480 | Not supported | Not cell-type specific |
chr5|80725452|80744615|+|4|circRNA|MSH3|ENST00000265081.6|9,10,11,12 | Not cell-type specific | CRAMS291 | Upregulated in MvN | HT29,SW480 | CircTest | Not cell-type specific |
chr5|84060299|84066606|-|3|circRNA|EDIL3|ENST00000296591.9|9,8,7 | Not cell-type specific | CRAMS189 | Downregulated in MvN | Not expressed in cell lines | CIRIquant | Not cell-type specific |
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