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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr5|145817893|145826200|-|4|circRNA|PRELID2|NM_138492|5,4,3,2 | Not cell-type specific | CRAMS100 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant & CircTest | Not cell-type specific |
chr5|148548667|148550262|-|2|circRNA|HTR4|ENST00000521530.5|3,2 | Not cell-type specific | CRAMS72 | Downregulated in PvN,Downregulated in MvN | Not expressed in cell lines | CIRIquant | Not cell-type specific |
chr5|154029488|154034967|-|4|circRNA|FAM114A2|ENST00000351797.8|5,4,3,2 | Not cell-type specific | CRAMS195 | Downregulated in MvN | SW480 | CircTest | Not cell-type specific |
chr5|159194715|159203656|-|2|circRNA|RNF145|NM_001199382|3,2 | Not cell-type specific | CRAMS236 | Upregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CircTest | Not cell-type specific |
chr5|171183194|171205612|+|4|circRNA|RANBP17|ENST00000616486.1|4,5,6,7 | Not cell-type specific | CRAMS13 | Downregulated in MvN | HCT116,HT29,SW620 | CIRIquant & CircTest | Not cell-type specific |
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