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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr8|73673106|73688813|-|2|circRNA|STAU2|ENST00000522695.5|3,2 | Not cell-type specific | CRAMS126 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant & CircTest | Not cell-type specific |
chr8|89722014|89725641|-|3|circRNA|RP11-37B2.1|NR_125822|4,3,2 | Not cell-type specific | CRAMS295 | Downregulated in MvN | Not expressed in cell lines | Not supported | Not cell-type specific |
chr8|94537102|94538346|-|2|circRNA|KIAA1429|ENST00000297591.9|4,3 | Not cell-type specific | CRAMS18 | Upregulated in PvN | HCT116,HT29 | CircTest | Not cell-type specific |
chr8|94664696|94665196|+|3|circRNA|ESRP1|ENST00000423620.6|7,8,9 | Not cell-type specific | CRAMS92 | Downregulated in PvN,Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant | Not cell-type specific |
chr9|100052416|100060172|-|3|circRNA|ERP44|ENST00000262455.6|4,3,2 | Not cell-type specific | CRAMS293 | Upregulated in MvN | HCT116,HT29,SW480,SW620 | CIRIquant | Not cell-type specific |
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