top of page
CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr8|130358016|130361771|-|2|circRNA|ASAP1|NM_001247996|4,3 | Not cell-type specific | CRAMS328 | Upregulated in MvN | HCT116,HT29,SW620 | CIRIquant & CircTest | Not cell-type specific |
chr8|132622610|132661627|-|6|circRNA|LRRC6|ENST00000618342.1|7,6,5,4,3,2 | Not cell-type specific | CRAMS231 | Downregulated in MvN | HCT116,SW480 | Not supported | Not cell-type specific |
chr8|132836539|132844318|+|5|circRNA|PHF20L1|ENST00000220847.8|15,16,17,18,19 | Not cell-type specific | CRAMS308 | Downregulated in MvN | HCT116,HT29 | CIRIquant & CircTest | Not cell-type specific |
chr8|140739017|140752316|-|5|circRNA|PTK2|ENST00000522684.5|21,20,19,18,17 | Not cell-type specific | CRAMS263 | Downregulated in MvN | HT29,LoVo | CircTest | Not cell-type specific |
chr8|30700080|30703240|-|2|circRNA|GSR|ENST00000221130.9|6,5 | Not cell-type specific | CRAMS290 | Upregulated in MvN | Not expressed in cell lines | CIRIquant & CircTest | Not cell-type specific |
Page 1 of 1
bottom of page