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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr7|43639448|43640649|-|2|circRNA|COA1|ENST00000415076.6|6,5 | Not cell-type specific | CRAMS159 | Downregulated in PvN | HCT116,HT29,LoVo,SW480,SW620 | Not supported | Not cell-type specific |
chr7|66991136|66994341|-|3|circRNA|SBDS|ENST00000246868.6|4,3,2 | Not cell-type specific | CRAMS58 | Downregulated in MvN,Downregulated in MvP | HT29,LoVo,SW480 | CIRIquant & CircTest | Not cell-type specific |
chr7|67098540|67117618|+|2|circRNA|TYW1|NM_018264|12,13 | Not cell-type specific | CRAMS354 | Downregulated in MvN | HCT116,HT29,LoVo,SW480 | Not supported | Not cell-type specific |
chr7|770470|775162|+|3|circRNA|DNAAF5|ENST00000297440.10|9,10,11 | Not cell-type specific | CRAMS207 | Downregulated in MvN | HCT116,HT29,SW480,SW620 | CircTest | Not cell-type specific |
chr7|8003907|8060248|+|4|circRNA|GLCCI1|NM_138426|2,3,4,5 | Not cell-type specific | CRAMS86 | Downregulated in PvN,Downregulated in MvN | LoVo,SW480,SW620 | CIRIquant & CircTest | Not cell-type specific |
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