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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr1|116019581|116020885|+|2|circRNA|SLC22A15|ENST00000369503.8|3,4 | Not cell-type specific | N/A | Not differentially expressed | SW480 | Not differentially expressed | Not cell-type specific |
chr1|116941714|116949572|+|3|circRNA|PTGFRN|NM_020440|2,3,4 | Not cell-type specific | N/A | Not differentially expressed | SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr9|37424844|37426654|+|3|circRNA|GRHPR|ENST00000493368.5|2,3,4 | Not cell-type specific | CRAMS303 | Downregulated in MvN | HCT116,LoVo,SW480,SW620 | CIRIquant & CircTest | Not cell-type specific |
chr9|4286037|4286523|-|1|circRNA|GLIS3|NM_001042413|2 | Not cell-type specific | CRAMS14 | Downregulated in MvN,Downregulated in MvP | HCT116,HT29,LoVo | CircTest | Not cell-type specific |
chr9|5968018|5988545|-|2|circRNA|KIAA2026|ENST00000399933.7|3,2 | Not cell-type specific | CRAMS246 | Downregulated in MvN | HCT116,HT29,LoVo,SW480,SW620 | CIRIquant | Not cell-type specific |
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