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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr1|156265780|156274686|-|8|circRNA|SMG5|ENST00000361813.5|12,11,10,9,8,7,6,5 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr1|156272319|156279034|-|6|circRNA|SMG5|ENST00000361813.5|7,6,5,4,3,2 | Myeloid Cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chr1|15630324|15651895|+|6|circRNA|DDI2|NM_032341|3,4,5,6,7,8 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW620 | Not differentially expressed | Not cell-type specific |
chr1|156317165|156325089|-|5|circRNA|CCT3|NM_001008800|8,7,6,5,4 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr1|156320838|156334918|-|5|circRNA|CCT3|NM_005998|7,6,5,4,3 | Not cell-type specific | N/A | Not differentially expressed | LoVo,SW480 | Not differentially expressed | Not cell-type specific |
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