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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr1|32030297|32038619|+|5|circRNA|KHDRBS1|NM_001271878|2,3,4,5,6 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW480 | Not differentially expressed | Not cell-type specific |
chr1|32036909|32039573|+|4|circRNA|KHDRBS1|NM_001271878|4,5,6,7 | Not cell-type specific | N/A | Not differentially expressed | HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr1|32163234|32167296|+|3|circRNA|KPNA6|ENST00000373625.7|10,11,12 | Not cell-type specific | N/A | Not differentially expressed | HCT116,LoVo | Not differentially expressed | Not cell-type specific |
chr1|32184524|32188124|+|2|circRNA|TXLNA|ENST00000373610.7|4,5 | Myeloid Cells | N/A | Not differentially expressed | HT29,SW480,SW620 | Not differentially expressed | Not supported |
chr1|32192310|32193300|+|3|circRNA|TXLNA|ENST00000373610.7|7,8,9 | Not cell-type specific | N/A | Not differentially expressed | SW480 | Not differentially expressed | Not cell-type specific |
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