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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr1|61990167|62017947|+|2|circRNA|INADL|ENST00000316485.10|28,29 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW480 | Not differentially expressed | Not cell-type specific |
chr1|61990167|62038049|+|3|circRNA|INADL|ENST00000316485.10|28,29,30 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,SW480 | Not differentially expressed | Not cell-type specific |
chr1|48305786|48413151|-|9|circRNA|SPATA6|ENST00000371847.7|12,11,10,9,8,7,6,5,4 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr1|48355669|48359770|-|2|circRNA|SPATA6|ENST00000371847.7|11,10 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,SW480 | Not differentially expressed | Not cell-type specific |
chr1|48355669|48403882|-|6|circRNA|SPATA6|ENST00000371847.7|11,10,9,8,7,6 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
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