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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr1|59900964|59916100|-|7|circRNA|CYP2J2|NM_000775|8,7,6,5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | LoVo | Not differentially expressed | Not cell-type specific |
chr1|61383236|61406727|+|3|circRNA|NFIA|ENST00000371191.5|7,8,9 | Not cell-type specific | N/A | Not differentially expressed | HCT116,LoVo,SW480 | Not differentially expressed | Not cell-type specific |
chr1|61683416|61709437|-|4|circRNA|TM2D1|ENST00000606498.5|6,5,4,3 | Not cell-type specific | N/A | Not differentially expressed | HCT116 | Not differentially expressed | Not cell-type specific |
chr1|61827421|61884408|+|7|circRNA|INADL|ENST00000316485.10|16,17,18,19,20,21,22 | Stromal cells | N/A | Not differentially expressed | HT29 | Not differentially expressed | Not supported |
chr1|61856029|61875366|+|4|circRNA|INADL|ENST00000316485.10|18,19,20,21 | Not cell-type specific | N/A | Not differentially expressed | HT29,LoVo,SW480 | Not differentially expressed | Not cell-type specific |
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