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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr8|38347496|38348215|-|1|circRNA|WHSC1L1|ENST00000317025.12|2 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr8|38819521|38820635|+|1|circRNA|TACC1|ENST00000519416.5|3 | Not cell-type specific | N/A | Not differentially expressed | LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr8|38825307|38836287|+|4|circRNA|TACC1|NM_001146216|4,5,6,7 | Myeloid Cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chr8|38836161|38838546|+|2|circRNA|TACC1|ENST00000519416.5|7,8 | Not cell-type specific | N/A | Not differentially expressed | SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr8|38950849|38957386|+|5|circRNA|PLEKHA2|NM_021623|6,7,8,9,10 | Not cell-type specific | N/A | Not differentially expressed | SW480 | Not differentially expressed | Not cell-type specific |
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