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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr10|16752538|16782084|-|5|circRNA|RSU1|ENST00000377921.7|6,5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,SW620 | Not differentially expressed | Not cell-type specific |
chr10|16982483|16990515|-|3|circRNA|CUBN|ENST00000377833.8|31,30,29 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr10|17153506|17174660|-|10|circRNA|TRDMT1|ENST00000354631.7|11,10,9,8,7,6,5,4,3,2 | Myeloid Cells | N/A | Not differentially expressed | SW620 | Not differentially expressed | Not supported |
chr10|17603559|17604047|-|3|circRNA|HACD1|ENST00000361271.7|4,3,2 | Not cell-type specific | N/A | Not differentially expressed | SW620 | Not differentially expressed | Not cell-type specific |
chr10|17688026|17700279|+|5|circRNA|STAM|ENST00000377524.7|5,6,7,8,9 | Myeloid Cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
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