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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr10|27022557|27048979|-|13|circRNA|ANKRD26|ENST00000436985.6|29,28,27,26,25,24,23,22,21,20,19,18,17 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr10|27037185|27048979|-|7|circRNA|ANKRD26|ENST00000436985.6|23,22,21,20,19,18,17 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr10|27039964|27043567|-|2|circRNA|ANKRD26|ENST00000436985.6|21,20 | Not cell-type specific | N/A | Not differentially expressed | SW480 | Not differentially expressed | Not cell-type specific |
chr10|27060344|27061242|-|3|circRNA|ANKRD26|NM_001256053|15,14,13 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr10|27114520|27121448|-|7|circRNA|YME1L1|NM_001253866|17,16,15,14,13,12,11 | Not cell-type specific | N/A | Not differentially expressed | LoVo,SW620 | Not differentially expressed | Not cell-type specific |
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