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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr10|95395000|95410777|-|5|circRNA|SORBS1|NM_001034954|12,11,10,9,8 | Epithelial cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chr10|95839690|95847706|+|5|circRNA|ENTPD1|ENST00000453258.6|3,4,5,6,7 | Myeloid Cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chr10|95955393|95974156|+|7|circRNA|RP11-248J23.6|ENST00000472454.6|3,4,5,6,7,8,9 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr10|96544075|96565426|-|7|circRNA|TM9SF3|ENST00000371142.8|9,8,7,6,5,4,3 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr10|96544075|96576829|-|8|circRNA|TM9SF3|ENST00000371142.8|9,8,7,6,5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
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