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TMECircDB

The Maher Lab | Washington University

CircRNA Cell-Type Specific Expression

Use criteria below to search among 11,682 circRNAs:

*Click CircRNA to view comprehensive information in new page.

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​*CircRNA IDs are unique identifiers assigned to each circRNA in the format of

“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”

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*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.

CircRNA*
Cell-Type Specificity
CRAMS ID
Differential Expression Status
Cell Line Expression
DE Support by Other Tools
Cell-Type Specificity Support by circSC
chr11|118786051|118786518|-|1|circRNA|DDX6|NM_001257191|2
Not cell-type specific
N/A
Not differentially expressed
HCT116,HT29,SW480,SW620
Not differentially expressed
Not cell-type specific
chr11|119025330|119025966|-|1|ciRNA|SLC37A4|ENST00000525102.5|8
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr11|11902714|11922891|+|6|circRNA|USP47|ENST00000339865.9|5,6,7,8,9,10
Myeloid Cells
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not supported
chr11|11905548|11909012|+|1|ciRNA|USP47|ENST00000339865.9|7
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr11|119069172|119073951|+|6|circRNA|VPS11|NM_001290185|2,3,4,5,6,7
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
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