top of page
CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr11|36227084|36227430|+|1|circRNA|LDLRAD3|ENST00000524419.5|5 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr11|36400996|36419303|+|3|circRNA|PRR5L|NM_001160167|2,3,4 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr11|3691346|3695606|-|3|circRNA|NUP98|ENST00000324932.11|28,27,26 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo | Not differentially expressed | Not cell-type specific |
chr11|3691346|3700839|-|5|circRNA|NUP98|ENST00000324932.11|28,27,26,25,24 | Not cell-type specific | N/A | Not differentially expressed | LoVo | Not differentially expressed | Not cell-type specific |
chr11|3700609|3702892|-|2|circRNA|NUP98|ENST00000324932.11|24,23 | Not cell-type specific | N/A | Not differentially expressed | HT29 | Not differentially expressed | Not cell-type specific |
Page 1 of 1
bottom of page