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TMECircDB

The Maher Lab | Washington University

CircRNA Cell-Type Specific Expression

Use criteria below to search among 11,682 circRNAs:

*Click CircRNA to view comprehensive information in new page.

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​*CircRNA IDs are unique identifiers assigned to each circRNA in the format of

“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”

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*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.

CircRNA*
Cell-Type Specificity
CRAMS ID
Differential Expression Status
Cell Line Expression
DE Support by Other Tools
Cell-Type Specificity Support by circSC
chr11|93687643|93706897|+|9|circRNA|CEP295|ENST00000325212.10|10,11,12,13,14,15,16,17,18
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr11|93696319|93700186|+|2|circRNA|CEP295|ENST00000325212.10|14,15
Not cell-type specific
N/A
Not differentially expressed
HCT116,HT29,LoVo,SW480,SW620
Not differentially expressed
Not cell-type specific
chr11|93724253|93725831|+|2|circRNA|CEP295|ENST00000325212.10|22,23
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr11|93731149|93737239|-|9|circRNA|TAF1D|ENST00000526015.5|12,11,10,9,8,7,6,5,4
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr11|93738523|93739236|-|1|ciRNA|TAF1D|ENST00000323981.6|2
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
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