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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr13|114236644|114242280|+|5|circRNA|CDC16|ENST00000360383.7|2,3,4,5,6 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr13|114236644|114263014|+|15|circRNA|CDC16|ENST00000360383.7|2,3,4,5,6,7,8,9,10,11,12,13,14,15,16 | Not cell-type specific | N/A | Not differentially expressed | HCT116 | Not differentially expressed | Not cell-type specific |
chr13|19648421|19650260|+|2|circRNA|MPHOSPH8|NM_017520|4,5 | Not cell-type specific | N/A | Not differentially expressed | HT29 | Not differentially expressed | Not cell-type specific |
chr13|19661697|19668531|+|4|circRNA|MPHOSPH8|NM_017520|8,9,10,11 | Myeloid Cells | N/A | Not differentially expressed | LoVo,SW620 | Not differentially expressed | Not supported |
chr13|19730238|19759418|-|4|circRNA|PSPC1|NR_003272|6,5,4,3 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
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