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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr14|103662115|103662927|+|2|circRNA|RP11-73M18.2|ENST00000472726.2|7,8 | Not cell-type specific | N/A | Not differentially expressed | HT29 | Not differentially expressed | Not cell-type specific |
chr14|103669510|103677523|+|7|circRNA|RP11-73M18.2|ENST00000472726.2|9,10,11,12,13,14,15 | Epithelial cells | N/A | Not differentially expressed | LoVo,SW480,SW620 | Not differentially expressed | Not supported |
chr14|103673013|103673431|+|2|circRNA|RP11-73M18.2|ENST00000472726.2|11,12 | Myeloid Cells | N/A | Not differentially expressed | HCT116 | Not differentially expressed | Not supported |
chr14|103752999|103754244|-|2|circRNA|PPP1R13B|NM_015316|7,6 | Not cell-type specific | N/A | Not differentially expressed | HCT116,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr13|75326196|75349302|-|6|circRNA|TBC1D4|NM_001286658|10,9,8,7,6,5 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo | Not differentially expressed | Not cell-type specific |
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