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TMECircDB

The Maher Lab | Washington University

CircRNA Cell-Type Specific Expression

Use criteria below to search among 11,682 circRNAs:

*Click CircRNA to view comprehensive information in new page.

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​*CircRNA IDs are unique identifiers assigned to each circRNA in the format of

“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”

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*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.

CircRNA*
Cell-Type Specificity
CRAMS ID
Differential Expression Status
Cell Line Expression
DE Support by Other Tools
Cell-Type Specificity Support by circSC
chr9|109436882|109454574|-|5|circRNA|PTPN3|ENST00000262539.7|9,8,7,6,5
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr9|109880550|109880681|+|1|circRNA|PALM2|ENST00000374531.6|4
Myeloid Cells
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not supported
chr8|86474819|86507112|-|7|circRNA|RMDN1|NM_001286707|8,7,6,5,4,3,2
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr8|86486483|86507112|-|3|circRNA|RMDN1|NM_001286707|4,3,2
Not cell-type specific
N/A
Not differentially expressed
LoVo,SW480,SW620
Not differentially expressed
Not cell-type specific
chr8|86494828|86507112|-|2|circRNA|RMDN1|ENST00000522804.5|3,2
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
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