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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr14|87984393|87988523|-|4|circRNA|GALC|ENST00000261304.6|5,4,3,2 | Myeloid Cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chr14|88416710|88433212|+|6|circRNA|SPATA7|ENST00000556553.5|5,6,7,8,9,10 | Not cell-type specific | N/A | Not differentially expressed | SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr14|88416710|88437903|+|8|circRNA|SPATA7|ENST00000045347.11|5,6,7,8,9,10,11,12 | Epithelial cells | N/A | Not differentially expressed | SW620 | Not differentially expressed | Not supported |
chr14|88571083|88573007|+|3|circRNA|ZC3H14|NM_001160103|4,5,6 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr14|88574692|88578140|+|3|circRNA|ZC3H14|NM_001160103|7,8,9 | Not cell-type specific | N/A | Not differentially expressed | LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
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