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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr15|84687624|84691644|-|2|circRNA|SEC11A|NM_001271918|4,3 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480 | Not differentially expressed | Not cell-type specific |
chr15|84797868|84799977|+|5|circRNA|ZNF592|NM_014630|6,7,8,9,10 | Not cell-type specific | N/A | Not differentially expressed | HCT116 | Not differentially expressed | Not cell-type specific |
chr15|84933144|84935518|+|3|circRNA|SLC28A1|ENST00000394573.5|13,14,15 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr15|85064369|85067204|+|2|circRNA|PDE8A|ENST00000310298.8|3,4 | Not cell-type specific | N/A | Not differentially expressed | HT29,LoVo,SW480 | Not differentially expressed | Not cell-type specific |
chr15|85064369|85083644|+|5|circRNA|PDE8A|ENST00000310298.8|3,4,5,6,7 | Not cell-type specific | N/A | Not differentially expressed | HT29,LoVo | Not differentially expressed | Not cell-type specific |
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