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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr16|52444275|52450546|-|3|circRNA|TOX3|ENST00000407228.7|7,6,5 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr16|52450276|52468574|-|3|circRNA|TOX3|ENST00000407228.7|5,4,3 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr16|53155925|53157541|+|1|circRNA|CHD9|ENST00000447540.5|2 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480 | Not differentially expressed | Not cell-type specific |
chr16|53228982|53250066|+|10|circRNA|CHD9|ENST00000447540.5|8,9,10,11,12,13,14,15,16,17 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr16|53231418|53243016|+|5|circRNA|CHD9|ENST00000447540.5|9,10,11,12,13 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
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