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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr16|70560468|70564050|+|3|circRNA|SF3B3|ENST00000302516.9|16,17,18 | Myeloid Cells | N/A | Not differentially expressed | SW480 | Not differentially expressed | Not supported |
chr16|71569853|71572324|-|5|circRNA|TAT|ENST00000355962.4|10,9,8,7,6 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr16|71656570|71664099|-|4|circRNA|PHLPP2|ENST00000568004.5|11,10,9,8 | Not cell-type specific | N/A | Not differentially expressed | HCT116 | Not differentially expressed | Not cell-type specific |
chr16|71663898|71679535|-|7|circRNA|PHLPP2|ENST00000568004.5|8,7,6,5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW620 | Not differentially expressed | Not cell-type specific |
chr16|71667177|71681905|-|7|circRNA|PHLPP2|ENST00000568954.5|12,11,10,9,8,7,6 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29 | Not differentially expressed | Not cell-type specific |
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