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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr16|69776188|69842120|+|6|circRNA|WWP2|NM_007014|2,3,4,5,6,7 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr16|70010750|70014167|-|3|circRNA|PDXDC2P|ENST00000531894.5|16,15,14 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr16|70010750|70018097|-|4|circRNA|PDXDC2P|ENST00000531894.5|16,15,14,13 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr16|70143509|70146228|+|3|circRNA|PDPR|NM_017990|14,15,16 | Myeloid Cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chr16|70143509|70148553|+|4|circRNA|PDPR|NM_017990|14,15,16,17 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,SW620 | Not differentially expressed | Not cell-type specific |
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