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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr17|31517650|31517877|+|1|circRNA|RAB11FIP4|ENST00000621161.4|4 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr17|31527841|31528778|+|3|circRNA|RAB11FIP4|ENST00000621161.4|11,12,13 | Not cell-type specific | N/A | Not differentially expressed | SW620 | Not differentially expressed | Not cell-type specific |
chr17|31865365|31878781|-|7|circRNA|UTP6|ENST00000261708.8|18,17,16,15,14,13,12 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr17|31884423|31887313|-|3|circRNA|UTP6|ENST00000261708.8|10,9,8 | Myeloid Cells | N/A | Not differentially expressed | HT29 | Not differentially expressed | Not supported |
chr17|31940285|31966196|+|4|circRNA|SUZ12|ENST00000322652.9|2,3,4,5 | Not cell-type specific | N/A | Not differentially expressed | SW480 | Not differentially expressed | Not cell-type specific |
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