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TMECircDB

The Maher Lab | Washington University

CircRNA Cell-Type Specific Expression

Use criteria below to search among 11,682 circRNAs:

*Click CircRNA to view comprehensive information in new page.

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​*CircRNA IDs are unique identifiers assigned to each circRNA in the format of

“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”

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*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.

CircRNA*
Cell-Type Specificity
CRAMS ID
Differential Expression Status
Cell Line Expression
DE Support by Other Tools
Cell-Type Specificity Support by circSC
chr17|40181615|40192693|+|11|circRNA|RAPGEFL1|ENST00000456989.6|2,3,4,5,6,7,8,9,10,11,12
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr17|40188865|40189375|+|2|circRNA|RAPGEFL1|ENST00000456989.6|5,6
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr17|4021128|4022828|-|2|circRNA|ZZEF1|NM_015113|45,44
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr17|4034014|4062917|-|11|circRNA|ZZEF1|NM_015113|40,39,38,37,36,35,34,33,32,31,30
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr17|4051970|4058155|-|4|circRNA|ZZEF1|NM_015113|35,34,33,32
Not cell-type specific
N/A
Not differentially expressed
HCT116
Not differentially expressed
Not cell-type specific
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