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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr17|42834514|42839012|+|6|circRNA|PSME3|ENST00000545225.5|5,6,7,8,9,10 | Not cell-type specific | N/A | Not differentially expressed | HCT116 | Not differentially expressed | Not cell-type specific |
chr17|43063332|43074521|-|5|circRNA|BRCA1|NM_007298|17,16,15,14,13 | Not cell-type specific | N/A | Not differentially expressed | HCT116 | Not differentially expressed | Not cell-type specific |
chr17|43095845|43124115|-|8|circRNA|BRCA1|NR_027676|9,8,7,6,5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr17|43097243|43115779|-|6|circRNA|BRCA1|NM_007298|7,6,5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | HCT116 | Not differentially expressed | Not cell-type specific |
chr17|43104121|43104956|-|2|circRNA|BRCA1|NM_007298|5,4 | Myeloid Cells | N/A | Not differentially expressed | LoVo | Not differentially expressed | Not supported |
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