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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr17|73235475|73243003|+|2|circRNA|C17orf80|ENST00000255557.8|3,4 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW620 | Not differentially expressed | Not cell-type specific |
chr17|7499038|7499491|+|2|circRNA|POLR2A|ENST00000617998.4|9,10 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr17|75042180|75042659|-|2|circRNA|ATP5H|NM_001003785|3,2 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr17|75208526|75209985|+|2|circRNA|NUP85|NM_024844|2,3 | Myeloid Cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chr17|75242335|75243570|-|4|circRNA|GGA3|NM_001291641|9,8,7,6 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW620 | Not differentially expressed | Not cell-type specific |
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