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TMECircDB

The Maher Lab | Washington University

CircRNA Cell-Type Specific Expression

Use criteria below to search among 11,682 circRNAs:

*Click CircRNA to view comprehensive information in new page.

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​*CircRNA IDs are unique identifiers assigned to each circRNA in the format of

“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”

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*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.

CircRNA*
Cell-Type Specificity
CRAMS ID
Differential Expression Status
Cell Line Expression
DE Support by Other Tools
Cell-Type Specificity Support by circSC
chr17|67086828|67149985|-|14|circRNA|HELZ|ENST00000358691.9|32,31,30,29,28,27,26,25,24,23,22,21,20,19
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr17|67128650|67149985|-|6|circRNA|HELZ|ENST00000358691.9|24,23,22,21,20,19
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr17|67166477|67167796|-|2|circRNA|HELZ|ENST00000358691.9|15,14
Not cell-type specific
N/A
Not differentially expressed
HT29,SW620
Not differentially expressed
Not cell-type specific
chr17|67193966|67195470|-|2|circRNA|HELZ|ENST00000358691.9|9,8
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr17|67552345|67553577|+|1|ciRNA|PITPNC1|ENST00000299954.13|3
Myeloid Cells
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not supported
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