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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr17|80287814|80291827|+|5|circRNA|RNF213|NM_020954|4,5,6,7,8 | Not cell-type specific | N/A | Not differentially expressed | SW620 | Not differentially expressed | Not cell-type specific |
chr17|80289658|80290728|+|2|circRNA|RNF213|NM_020954|6,7 | Not cell-type specific | N/A | Not differentially expressed | HCT116 | Not differentially expressed | Not cell-type specific |
chr17|80289658|80291827|+|3|circRNA|RNF213|NM_020954|6,7,8 | Not cell-type specific | N/A | Not differentially expressed | LoVo | Not differentially expressed | Not cell-type specific |
chr17|80317187|80348286|+|14|circRNA|RNF213|NM_001256071|16,17,18,19,20,21,22,23,24,25,26,27,28,29 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr17|80375759|80385621|+|11|circRNA|RNF213|NM_001256071|51,52,53,54,55,56,57,58,59,60,61 | Myeloid Cells | N/A | Not differentially expressed | HT29,LoVo | Not differentially expressed | Not supported |
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