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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr17|77487423|77490859|+|4|circRNA|SEPT9|ENST00000427177.5|5,6,7,8 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr17|78086502|78087093|+|2|circRNA|TNRC6C|ENST00000588061.5|14,15 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr17|78091439|78093763|+|3|circRNA|TNRC6C|ENST00000588061.5|16,17,18 | Not cell-type specific | N/A | Not differentially expressed | SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr17|783082|788132|+|2|circRNA|RNMTL1|NM_018146|2,3 | Myeloid Cells | N/A | Not differentially expressed | SW620 | Not differentially expressed | Not supported |
chr17|78392475|78404089|+|6|circRNA|PGS1|NM_024419|2,3,4,5,6,7 | Not cell-type specific | N/A | Not differentially expressed | HT29,LoVo | Not differentially expressed | Not cell-type specific |
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