top of page

TMECircDB

The Maher Lab | Washington University

CircRNA Cell-Type Specific Expression

Use criteria below to search among 11,682 circRNAs:

*Click CircRNA to view comprehensive information in new page.

​

​*CircRNA IDs are unique identifiers assigned to each circRNA in the format of

“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”

​

*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.

CircRNA*
Cell-Type Specificity
CRAMS ID
Differential Expression Status
Cell Line Expression
DE Support by Other Tools
Cell-Type Specificity Support by circSC
chr18|2738396|2762236|+|11|circRNA|SMCHD1|ENST00000320876.10|26,27,28,29,30,31,32,33,34,35,36
Myeloid Cells
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not supported
chr18|2762104|2772372|+|6|circRNA|SMCHD1|ENST00000320876.10|36,37,38,39,40,41
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr18|2784449|2796521|+|3|circRNA|SMCHD1|ENST00000320876.10|45,46,47
Myeloid Cells
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not supported
chr18|27982943|28013909|-|12|circRNA|CDH2|NM_001308176|13,12,11,10,9,8,7,6,5,4,3,2
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr18|2890560|2892486|+|1|circRNA|EMILIN2|NM_032048|4
Not cell-type specific
N/A
Not differentially expressed
HCT116,LoVo
Not differentially expressed
Not cell-type specific
Page 1 of 1

Follow Us:

  • Twitter Clean
bottom of page