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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr18|50918109|50921187|+|4|circRNA|ME2|ENST00000321341.9|7,8,9,10 | Not cell-type specific | N/A | Not differentially expressed | HT29 | Not differentially expressed | Not cell-type specific |
chr18|50918109|50940386|+|9|circRNA|ME2|ENST00000321341.9|7,8,9,10,11,12,13,14,15 | Myeloid Cells | N/A | Not differentially expressed | HCT116,LoVo | Not differentially expressed | Not supported |
chr18|50924097|50932360|+|3|circRNA|ME2|ENST00000321341.9|11,12,13 | Not cell-type specific | N/A | Not differentially expressed | LoVo,SW480 | Not differentially expressed | Not cell-type specific |
chr18|51046919|51067187|+|9|circRNA|SMAD4|ENST00000398417.6|2,3,4,5,6,7,8,9,10 | Not cell-type specific | N/A | Not differentially expressed | HCT116,LoVo,SW480 | Not differentially expressed | Not cell-type specific |
chr18|51054780|51067187|+|6|circRNA|SMAD4|ENST00000398417.6|5,6,7,8,9,10 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480 | Not differentially expressed | Not cell-type specific |
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