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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr9|126392065|126395697|+|2|circRNA|MVB12B|NM_033446|5,6 | Not cell-type specific | N/A | Not differentially expressed | LoVo | Not differentially expressed | Not cell-type specific |
chr9|127034430|127069356|+|4|circRNA|RALGPS1|NM_001190730|5,6,7,8 | Not cell-type specific | N/A | Not differentially expressed | LoVo,SW480 | Not differentially expressed | Not cell-type specific |
chr9|127195090|127199066|+|3|circRNA|RALGPS1|ENST00000259351.9|12,13,14 | Not cell-type specific | N/A | Not differentially expressed | HCT116,LoVo | Not differentially expressed | Not cell-type specific |
chr9|127339644|127342334|+|2|circRNA|GARNL3|ENST00000435213.6|14,15 | Not cell-type specific | N/A | Not differentially expressed | LoVo,SW480 | Not differentially expressed | Not cell-type specific |
chr9|127344234|127345477|+|2|circRNA|GARNL3|ENST00000435213.6|16,17 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
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