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TMECircDB

The Maher Lab | Washington University

CircRNA Cell-Type Specific Expression

Use criteria below to search among 11,682 circRNAs:

*Click CircRNA to view comprehensive information in new page.

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​*CircRNA IDs are unique identifiers assigned to each circRNA in the format of

“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”

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*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.

CircRNA*
Cell-Type Specificity
CRAMS ID
Differential Expression Status
Cell Line Expression
DE Support by Other Tools
Cell-Type Specificity Support by circSC
chr18|44701174|44869283|+|2|circRNA|SETBP1|ENST00000426838.8|2,3
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr18|44949880|44953340|+|1|circRNA|SETBP1|ENST00000282030.5|4
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr18|45734273|45748425|+|5|circRNA|SLC14A1|NM_001308278|4,5,6,7,8
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr18|45903972|45910742|-|3|circRNA|EPG5|ENST00000282041.9|25,24,23
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr18|46088108|46095131|-|5|circRNA|ATP5A1|ENST00000398752.10|6,5,4,3,2
Not cell-type specific
N/A
Not differentially expressed
HCT116
Not differentially expressed
Not cell-type specific
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