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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr19|13332868|13334493|-|2|circRNA|CACNA1A|ENST00000360228.9|9,8 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr19|13817215|13817976|+|2|circRNA|ZSWIM4|ENST00000254323.6|7,8 | Stromal cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chr19|13912322|13913638|+|4|circRNA|CC2D1A|NM_017721|3,4,5,6 | Not cell-type specific | N/A | Not differentially expressed | HT29,LoVo,SW620 | Not differentially expressed | Not cell-type specific |
chr19|13923332|13923811|+|3|circRNA|CC2D1A|NM_017721|15,16,17 | Not cell-type specific | N/A | Not differentially expressed | LoVo,SW620 | Not differentially expressed | Not cell-type specific |
chr19|13927892|13928188|+|2|circRNA|CC2D1A|NM_017721|23,24 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
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