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TMECircDB

The Maher Lab | Washington University

CircRNA Cell-Type Specific Expression

Use criteria below to search among 11,682 circRNAs:

*Click CircRNA to view comprehensive information in new page.

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​*CircRNA IDs are unique identifiers assigned to each circRNA in the format of

“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”

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*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.

CircRNA*
Cell-Type Specificity
CRAMS ID
Differential Expression Status
Cell Line Expression
DE Support by Other Tools
Cell-Type Specificity Support by circSC
chr19|47143493|47155213|+|4|circRNA|SAE1|ENST00000594144.5|3,4,5,6
Not cell-type specific
N/A
Not differentially expressed
HCT116,HT29,LoVo,SW620
Not differentially expressed
Not cell-type specific
chr19|47264602|47264946|+|2|circRNA|CCDC9|ENST00000221922.10|6,7
Not cell-type specific
N/A
Not differentially expressed
HCT116,HT29,LoVo,SW480,SW620
Not differentially expressed
Not cell-type specific
chr19|23662113|23663158|-|2|circRNA|ZNF675|ENST00000601935.5|3,2
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr19|23807825|23808814|+|2|circRNA|RP11-255H23.2|ENST00000471224.5|2,3
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
chr19|24105939|24106643|+|2|circRNA|ZNF254|ENST00000613065.4|3,4
Not cell-type specific
N/A
Not differentially expressed
Not expressed in cell lines
Not differentially expressed
Not cell-type specific
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