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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr2|196890827|196898369|-|5|circRNA|PGAP1|NM_024989|10,9,8,7,6 | Not cell-type specific | N/A | Not differentially expressed | HCT116,SW480 | Not differentially expressed | Not cell-type specific |
chr2|196912881|196922186|-|4|circRNA|PGAP1|ENST00000423035.5|5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | HCT116,HT29,LoVo,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr2|196995378|197005910|-|6|circRNA|ANKRD44|ENST00000424317.5|20,19,18,17,16,15 | Myeloid Cells | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not supported |
chr2|197110765|197122792|-|3|circRNA|ANKRD44|ENST00000282272.12|9,8,7 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr2|197416740|197420542|-|3|circRNA|SF3B1|ENST00000335508.10|6,5,4 | Not cell-type specific | N/A | Not differentially expressed | HCT116,LoVo | Not differentially expressed | Not cell-type specific |
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