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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr2|206127796|206152510|-|14|circRNA|NDUFS1|ENST00000233190.10|16,15,14,13,12,11,10,9,8,7,6,5,4,3 | Stromal cells | N/A | Not differentially expressed | HCT116,SW480 | Not differentially expressed | Not supported |
chr2|206132944|206142069|-|3|circRNA|NDUFS1|ENST00000233190.10|14,13,12 | Not cell-type specific | N/A | Not differentially expressed | HT29 | Not differentially expressed | Not cell-type specific |
chr2|206149019|206153682|-|4|circRNA|NDUFS1|ENST00000233190.10|5,4,3,2 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr2|206279539|206297373|+|3|circRNA|ZDBF2|NM_020923|2,3,4 | Not cell-type specific | N/A | Not differentially expressed | HCT116,LoVo,SW620 | Not differentially expressed | Not cell-type specific |
chr2|20739970|20740205|-|1|circRNA|LDAH|ENST00000435420.6|4 | Not cell-type specific | N/A | Not differentially expressed | HCT116,LoVo | Not differentially expressed | Not cell-type specific |
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