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CircRNA Cell-Type Specific Expression
Use criteria below to search among 11,682 circRNAs:
*Click CircRNA to view comprehensive information in new page.
*CircRNA IDs are unique identifiers assigned to each circRNA in the format of
“chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices”
*Myeloid Cells from Lee et al. and Macrophages from Li et al. are considered the same cell type; Endothelial Cells and Fibroblasts from Li et al. are considered as subtypes of Stromal Cells from Lee et al. Cell-type specificity is based on the consensus of both models.
CircRNA* | Cell-Type Specificity | CRAMS ID | Differential Expression Status | Cell Line Expression | DE Support by Other Tools | Cell-Type Specificity Support by circSC |
|---|---|---|---|---|---|---|
chr2|241140520|241143074|-|2|circRNA|PASK|ENST00000234040.8|3,2 | Not cell-type specific | N/A | Not differentially expressed | HT29,SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr2|241160331|241163401|+|2|circRNA|PPP1R7|NM_001282414|5,6 | Not cell-type specific | N/A | Not differentially expressed | SW480,SW620 | Not differentially expressed | Not cell-type specific |
chr2|241229832|241249980|-|16|circRNA|HDLBP|ENST00000391975.5|27,26,25,24,23,22,21,20,19,18,17,16,15,14,13,12 | Not cell-type specific | N/A | Not differentially expressed | Not expressed in cell lines | Not differentially expressed | Not cell-type specific |
chr2|241325992|241336098|+|3|circRNA|SEPT2|ENST00000391973.6|3,4,5 | Not cell-type specific | N/A | Not differentially expressed | SW480 | Not differentially expressed | Not cell-type specific |
chr2|241342991|241348191|+|4|circRNA|SEPT2|ENST00000391973.6|8,9,10,11 | Not cell-type specific | N/A | Not differentially expressed | LoVo,SW620 | Not differentially expressed | Not cell-type specific |
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